Package: PepSAVIms 0.9.2

Pritchard David

PepSAVIms: PepSAVI-MS Data Analysis

An implementation of the data processing and data analysis portion of the PepSAVI-MS pipeline developed by principal investigator Christine Kirkpatrick and the Hicks Laboratory at the University of North Carolina, as presented in the paper \emph{The "PepSAVI-MS" Pipeline for Natural Product Bioactive Peptide Discovery} (DOI:10.1021/acs.analchem.6b03625). The statistical analysis package presented herein provides a collection of software tools used to facilitate the prioritization of putative bioactive peptides from a complex biological matrix. Tools are provided to deconvolute mass spectrometry features into a single representation for each peptide charge state, filter compounds to include only those possibly contributing to the observed bioactivity, and prioritize these remaining compounds for those most likely contributing to each bioactivity data set.

Authors:Pritchard David [aut, cre], Kirkpatrick Christine [aut]

PepSAVIms_0.9.2.tar.gz
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PepSAVIms_0.9.2.tgz(r-4.4-any)PepSAVIms_0.9.2.tgz(r-4.3-any)
PepSAVIms_0.9.2.tar.gz(r-4.5-noble)PepSAVIms_0.9.2.tar.gz(r-4.4-noble)
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PepSAVIms.pdf |PepSAVIms.html
PepSAVIms/json (API)
NEWS

# Install 'PepSAVIms' in R:
install.packages('PepSAVIms', repos = c('https://dapritchard.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dpritchlibre/pepsavims/issues

Datasets:

On CRAN:

4.00 score 1 stars 10 scripts 135 downloads 1 mentions 6 exports 2 dependencies

Last updated 7 years agofrom:c37a0b2202. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 21 2024
R-4.5-winWARNINGNov 21 2024
R-4.5-linuxWARNINGNov 21 2024
R-4.4-winWARNINGNov 21 2024
R-4.4-macWARNINGNov 21 2024
R-4.3-winWARNINGNov 21 2024
R-4.3-macWARNINGNov 21 2024

Exports:binMSextract_rankedextractMSfilterMSmsDatrankEN

Dependencies:elasticnetlars

Kirkpatrick et al. (2016) data analysis

Rendered fromPaper_Analysis.Rnwusingknitr::knitron Nov 21 2024.

Last update: 2017-09-29
Started: 2016-07-19

PepSAVIms introduction

Rendered fromPepSAVIms_Introduction.Rnwusingknitr::knitron Nov 21 2024.

Last update: 2017-09-29
Started: 2016-11-09